@pennsylvaniaron
I had a look on your .ini file. I suggest you to remove all the tweaks related to IE. I don't remind if tweaks are applicated before or after the update integration, so IE tweaks may block IE 11 installation if applicated first.
I don't think that modifying silent updates order will change anything since IE 11 is installed before applying silent updates and installers. You can let the KB order as it is from older to newer.
All the infos about KB2685811 and 13 are written in the tutorial: if integrated with other updates, they will appear twice in the installed updates, and the double ones will be removed at the first deep-clean. it's not the case if integrated in RunOnce.